Publications - Biomedical Spectroscopy Lab

Full list of Andrew Berger’s publications, 1995-present:

https://www.ncbi.nlm.nih.gov/myncbi/andrew.berger.1/bibliography/public/

Lists for the largest subtopics in the BSL group over the years

Raman spectroscopy of bone (murine and human, ex vivo and in vivo)

Massie C, Knapp E, Awad HA, Berger AJ. Detection of osteoporotic-related bone changes and prediction of distal radius strength using Raman spectra from excised human cadaver finger bones. J Biomech. 2023 Dec;161:111852. doi: 10.1016/j.jbiomech.2023.111852. Epub 2023 Oct 25. PubMed PMID: 37924650; PubMed Central PMCID: PMC10872783.
Massie C, Chen K, Berger AJ. Calibration Technique for Suppressing Residual Etalon Artifacts in Slit-Averaged Raman Spectroscopy. Appl Spectrosc. 2022 Feb;76(2):255-261. doi: 10.1177/00037028211046643. Epub 2021 Oct 1. PubMed PMID: 34596460; PubMed Central PMCID: PMC8831449.
Massie C, Knapp E, Chen K, Berger AJ, Awad HA. Improved prediction of femoral fracture toughness in mice by combining standard medical imaging with Raman spectroscopy. J Biomech. 2021 Feb 12;116:110243. doi: 10.1016/j.jbiomech.2021.110243. Epub 2021 Jan 13. PubMed PMID: 33485148; PubMed Central PMCID: PMC8592058.
Chen K, Massie C, Berger AJ. Soft-tissue spectral subtraction improves transcutaneous Raman estimates of murine bone strength in vivo. J Biophotonics. 2020 Nov;13(11):e202000256. doi: 10.1002/jbio.202000256. Epub 2020 Aug 31. PubMed PMID: 32749067; PubMed Central PMCID: PMC8320303.
Shu C, Chen K, Lynch M, Maher JR, Awad HA, Berger AJ. Spatially offset Raman spectroscopy for in vivo bone strength prediction. Biomed Opt Express. 2018 Oct 1;9(10):4781-4791. doi: 10.1364/BOE.9.004781. eCollection 2018 Oct 1. PubMed PMID: 30319902; PubMed Central PMCID: PMC6179397.
Feng G, Ochoa M, Maher JR, Awad HA, Berger AJ. Sensitivity of spatially offset Raman spectroscopy (SORS) to subcortical bone tissue. J Biophotonics. 2017 Aug;10(8):990-996. doi: 10.1002/jbio.201600317. Epub 2017 May 2. PubMed PMID: 28464501; PubMed Central PMCID: PMC5971662.
Maher JR, Inzana JA, Awad HA, Berger AJ. Overconstrained library-based fitting method reveals age- and disease-related differences in transcutaneous Raman spectra of murine bones. J Biomed Opt. 2013 Jul;18(7):077001. doi: 10.1117/1.JBO.18.7.077001. PubMed PMID: 23817761; PubMed Central PMCID: PMC3697032.
Maher JR, Inzana JA, Awad HA, Berger AJ. Overconstrained library-based fitting method reveals age- and disease-related differences in transcutaneous Raman spectra of murine bones. J Biomed Opt. 2013 Jul;18(7):077001. doi: 10.1117/1.JBO.18.7.077001. PubMed PMID: 23817761; PubMed Central PMCID: PMC3697032.
Beier EE, Maher JR, Sheu TJ, Cory-Slechta DA, Berger AJ, Zuscik MJ, Puzas JE. Heavy metal lead exposure, osteoporotic-like phenotype in an animal model, and depression of Wnt signaling. Environ Health Perspect. 2013 Jan;121(1):97-104. doi: 10.1289/ehp.1205374. Epub 2012 Oct 19. PubMed PMID: 23086611; PubMed Central PMCID: PMC3552813.
Takahata M, Maher JR, Juneja SC, Inzana J, Xing L, Schwarz EM, Berger AJ, Awad HA. Mechanisms of bone fragility in a mouse model of glucocorticoid-treated rheumatoid arthritis: implications for insufficiency fracture risk. Arthritis Rheum. 2012 Nov;64(11):3649-59. doi: 10.1002/art.34639. PubMed PMID: 22832945; PubMed Central PMCID: PMC3678247.
Maher JR, Takahata M, Awad HA, Berger AJ. Raman spectroscopy detects deterioration in biomechanical properties of bone in a glucocorticoid-treated mouse model of rheumatoid arthritis. J Biomed Opt. 2011 Aug;16(8):087012. doi: 10.1117/1.3613933. PubMed PMID: 21895339; PubMed Central PMCID: PMC3170399.
Maher JR, Berger AJ. Determination of ideal offset for spatially offset Raman spectroscopy. Appl Spectrosc. 2010 Jan;64(1):61-5. doi: 10.1366/000370210790571936. PubMed PMID: 20132599.

Light-scattering of organelles in single cells:

Dunn KJ, Matlock A, Funkenbusch G, Yaqoob Z, So PTC, Berger AJ. Optical diffraction tomography for assessing single cell models in angular light scattering. Biomed Opt Express. 2024 Feb 1;15(2):973-990. doi: 10.1364/BOE.512149. eCollection 2024 Feb 1. PubMed PMID: 38404316; PubMed Central PMCID: PMC10890861.
Dunn KJ, Berger AJ. Three-dimensional angular scattering simulations inform analysis of scattering from single cells. J Biomed Opt. 2023 Aug;28(8):086501. doi: 10.1117/1.JBO.28.8.086501. Epub 2023 Aug 9. PubMed PMID: 37564163; PubMed Central PMCID: PMC10411915.
Dunn KJ, Elias TM, Brown EB, Berger AJ. Matching an immersion medium’s refractive index to a cell’s cytosol isolates organelle scattering. Biomed Opt Express. 2022 Aug 1;13(8):4236-4246. doi: 10.1364/BOE.461874. eCollection 2022 Aug 1. PubMed PMID: 36032574; PubMed Central PMCID: PMC9408249.
Draham RL, Dunn KJ, Berger AJ. Phase-sensitive, angle-resolved light-scattering microscopy of single cells. Opt Lett. 2020 Dec 15;45(24):6775-6778. doi: 10.1364/OL.409345. PubMed PMID: 33325894.
Cannaday AE, Sorrells JE, Berger AJ. Angularly resolved, finely sampled elastic scattering measurements of single cells: requirements for robust organelle size extractions. J Biomed Opt. 2019 Aug;24(8):1-12. doi: 10.1117/1.JBO.24.8.086502. PubMed PMID: 31446681; PubMed Central PMCID: PMC6983487.
Shipp DW, Qian R, Berger AJ. Angular-domain scattering interferometry. Opt Lett. 2013 Nov 15;38(22):4750-3. doi: 10.1364/OL.38.004750. PubMed PMID: 24322123.
Smith ZJ, Wang JC, Quataert SA, Berger AJ. Integrated Raman and angular scattering microscopy reveals chemical and morphological differences between activated and nonactivated CD8+ T lymphocytes. J Biomed Opt. 2010 May-Jun;15(3):036021. doi: 10.1117/1.3443794. PubMed PMID: 20615023; PubMed Central PMCID: PMC2903831.
Smith ZJ, Berger AJ. Validation of an integrated Raman- and angular-scattering microscopy system on heterogeneous bead mixtures and single human immune cells. Appl Opt. 2009 Apr 1;48(10):D109-20. doi: 10.1364/ao.48.00d109. PubMed PMID: 19340098.
Smith ZJ, Berger AJ. Construction of an integrated Raman- and angular-scattering microscope. Rev Sci Instrum. 2009 Apr;80(4):044302. doi: 10.1063/1.3124797. PubMed PMID: 19405678.
Smith ZJ, Berger AJ. Integrated Raman- and angular-scattering microscopy. Opt Lett. 2008 Apr 1;33(7):714-6. doi: 10.1364/ol.33.000714. PubMed PMID: 18382527.